Create an executable model with CaSQ

Create an executable model with CaSQ#

import casq.celldesigner2qual as casq
from colomoto_jupyter import tabulate
## Convert a cell designer map
casq.map_to_model("Apoptosis_VS_SSA_AN.xml", "Apoptosis_VS_SSA_AN.sbml")

Load and view the model in GINsim#

import biolqm
import ginsim
m = biolqm.load("Apoptosis_VS_SSA_AN.sbml")
m = biolqm.sanitize(m)

lrg = biolqm.to_ginsim(m)
ginsim.show(lrg)