org.colomoto.biolqm.tool.attractor

Class AttractorTool

java.lang.Object

org.colomoto.biolqm.tool.AbstractTool

org.colomoto.biolqm.tool.attractor.AttractorTool

All Implemented Interfaces:

Service, LogicalModelTool

@ProviderFor(value=LogicalModelTool.class)
public class AttractorTool
extends AbstractTool

Identification of synchronous attractors using a SAT solver, as proposed by E. Dubrova and M. Teslenko in "A SAT-Based Algorithm for Finding Attractors in Synchronous Boolean Networks"

Author:

Mitchell Markin

Constructor Summary

Constructors

Constructor and Description
AttractorTool()

Method Summary

Modifier and Type	Method and Description
Object	getResult(LogicalModel model, Object settings) Get the analysis result with a custom setting.
void	run(LogicalModel model, String... parameters) Run the tool on a logical model.

Methods inherited from class org.colomoto.biolqm.tool.AbstractTool

getHelp, getID, getName, getResult, getResult, getResult, getSettings, getSettings, getSettings, supportsMultivalued, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AttractorTool

public AttractorTool()

Method Detail

run

public void run(LogicalModel model,
                String... parameters)

Description copied from interface: LogicalModelTool

Run the tool on a logical model.

Parameters:

model - the model to use

parameters - the raw command line parameters

getResult

public Object getResult(LogicalModel model,
                        Object settings)
                 throws Exception

Description copied from interface: LogicalModelTool

Get the analysis result with a custom setting.

Parameters:

model - the source model

settings - a custom setting object

Returns:

the result object

Throws:

Exception - when the analysis could not be performed