org.colomoto.biolqm.modifier.perturbation

Class AbstractPerturbation

java.lang.Object

org.colomoto.biolqm.modifier.perturbation.AbstractPerturbation

All Implemented Interfaces:

LogicalModelPerturbation

Direct Known Subclasses:

FixedValuePerturbation, InteractionPerturbation, MultiplePerturbation, RangePerturbation

public abstract class AbstractPerturbation
extends Object
implements LogicalModelPerturbation

Base class for Perturbations. It only provides a generic apply method: clone the model and update the clone.

Author:

Aurelien Naldi

Constructor Summary

Constructors

Constructor and Description
AbstractPerturbation()

Method Summary

Modifier and Type	Method and Description
LogicalModel	apply(LogicalModel model) Apply the perturbation.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.colomoto.biolqm.modifier.perturbation.LogicalModelPerturbation

affectsNode, restrictValues, update

Constructor Detail

AbstractPerturbation

public AbstractPerturbation()

Method Detail

apply

public LogicalModel apply(LogicalModel model)

Description copied from interface: LogicalModelPerturbation

Apply the perturbation.

Specified by:

apply in interface LogicalModelPerturbation

Parameters:

model - the model to modify

Returns:

the modified model after applying the perturbation