org.colomoto.biolqm.io.sbml

Class SBMLqualImport

java.lang.Object

org.colomoto.biolqm.io.sbml.SBMLqualImport

public class SBMLqualImport
extends Object

Crude SBML import using JSBML and the qual extension.

Author:

Aurelien Naldi

Constructor Summary

Constructors

Constructor and Description
SBMLqualImport(File f)
SBMLqualImport(InputStream in)

Method Summary

Modifier and Type	Method and Description
int	getIndexForName(String name) Retrieve the model component corresponding to a SBML ID.
LogicalModel	getModel()
SBMLQualBundle	getQualBundle()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SBMLqualImport

public SBMLqualImport(InputStream in)
               throws XMLStreamException

Throws:

XMLStreamException

SBMLqualImport

public SBMLqualImport(File f)
               throws IOException,
                      XMLStreamException

Throws:

IOException

XMLStreamException

Method Detail

getQualBundle

public SBMLQualBundle getQualBundle()

getModel

public LogicalModel getModel()

getIndexForName

public int getIndexForName(String name)

Retrieve the model component corresponding to a SBML ID.

Parameters:

name - a SBML ID for a species

Returns:

the index of the corresponding component in the LogicalModel