| Package | Description |
|---|---|
| org.colomoto.biolqm |
Core for the bioLQM toolkit:
Main data structures for Logical Models
Service loader and manager
Launcher and Command-Line Interface
Script mode
|
| org.colomoto.biolqm.io |
Input/Output for Logical Model.
|
| org.colomoto.biolqm.io.bnet |
The format used by boolnet and pyboolnet
|
| org.colomoto.biolqm.io.booleannet |
The format used by booleannet and related tools in Reka Albert's group
|
| org.colomoto.biolqm.io.boolsim |
The format used by boolsim/GenYsis.
|
| org.colomoto.biolqm.io.cnet |
The format used by boolnet and pyboolnet
|
| org.colomoto.biolqm.io.functions |
logical functions.
|
| org.colomoto.biolqm.io.ginml |
GINML support.
|
| org.colomoto.biolqm.io.gna |
GNA (non-xml) support.
|
| org.colomoto.biolqm.io.maboss |
The format used by MaBoSS - https://maboss.curie.fr/
|
| org.colomoto.biolqm.io.petrinet |
Petri net support.
|
| org.colomoto.biolqm.io.pint |
The format used by Pint - http://loicpauleve.name/pint
|
| org.colomoto.biolqm.io.sbml |
SBML qual support.
|
| org.colomoto.biolqm.io.truthtable |
TruthTable file reader.
|
| Class and Description |
|---|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| LogicalModelFormat
Description of an available file format.
|
| LogicalModelFormat.MultivaluedSupport |
| OutputStreamProvider
Provide OutputStream objects to export filters.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| OutputStreamProvider
Provide OutputStream objects to export filters.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| OutputStreamProvider
Provide OutputStream objects to export filters.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
| Class and Description |
|---|
| AbstractFormat
Simple helper to fill in the boring parts of format declaration classes.
|
| LogicalModelFormat
Description of an available file format.
|
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