AvatarUtils (Logical Qualitative Models of biological network 0.4-SNAPSHOT API)

java.lang.Object
- org.colomoto.biolqm.io.avatar.AvatarUtils

```
public final class AvatarUtils
extends Object
```
Facilities for the management of logical models for simulations

Version:

1.0

Author:

Rui Henriques, Pedro Monteiro

Constructor Summary

Constructors
Constructor and Description

AvatarUtils()

Constructors
Constructor and Description
`AvatarUtils()`

Method Summary

All Methods Static Methods Concrete Methods
Modifier and Type	Method and Description
`static int[]`	`getChildrenWithSingleNode(int nstates, int node)` Creates a state where only a single component is initialized (others as -1)
`static int[]`	`getFreeChildren(int nstates)` Creates a state (int array) where components are initialized as -1
`static byte[]`	`getFreeState(int ncomponents)` Creates a state (byte array) where components are initialized as -1
`static int[]`	`getIdentityChildren(int nstates)` Creates an identity node array (e.g.
`static int[]`	`toArray(List<Integer> list)` Converts a list of integers to an array
`static byte[]`	`toByteArray(int[] vector)` Converts an integer array to a byte array
`static String`	`toOpenString(byte[] vector)`
`static String`	`toString(BigInteger[] vector)` BigInteger array to string
`static String`	`toString(boolean[] vector)` Boolean array to string
`static String`	`toString(byte[] vector)` Byte array to string
`static String`	`toString(double[] vector)` Double array to string
`static String`	`toString(double[][] matrix)` Double matrix to string
`static String`	`toString(int[] vector)` Integer array to string
`static String`	`toString(int[][] matrix)` Integer matrix to string
`static String`	`toString(List<byte[]> list)` List of states to string
`static String`	`toString(long[] vector)` Long array to string
`static String`	`toString(String[] vector)` String array to string

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - AvatarUtils
```
public AvatarUtils()
```
- Method Detail
  - getFreeChildren
```
public static int[] getFreeChildren(int nstates)
```
    Creates a state (int array) where components are initialized as -1
    
    Parameters:
    
    nstates - the number of components
    
    Returns:
    
    the free state (int array with components initialized with -1)
  - getFreeState
```
public static byte[] getFreeState(int ncomponents)
```
    Creates a state (byte array) where components are initialized as -1
    
    Parameters:
    
    ncomponents - the number of components
    
    Returns:
    
    the free state (byte array with components initialized with -1)
  - getIdentityChildren
```
public static int[] getIdentityChildren(int nstates)
```
    Creates an identity node array (e.g. [0,1,2,3..,n])
    
    Parameters:
    
    nstates - the number of components
    
    Returns:
    
    the identity node array
  - getChildrenWithSingleNode
```
public static int[] getChildrenWithSingleNode(int nstates,
                                              int node)
```
    Creates a state where only a single component is initialized (others as -1)
    
    Parameters:
    
    nstates - number of components
    
    node - the component to be initialized
    
    Returns:
    
    the array with the initialize 'node' component (e.g. [-1,-1,..,-1,p,-1,..-1]=
  - toString
```
public static String toString(List<byte[]> list)
```
    List of states to string
    
    Parameters:
    
    list - the list of states (byte arrays)
    
    Returns:
    
    a string representing a list of states
  - toString
```
public static String toString(byte[] vector)
```
    Byte array to string
    
    Parameters:
    
    vector - the byte array
    
    Returns:
    
    textual representation of the byte array
  - toOpenString
```
public static String toOpenString(byte[] vector)
```
  - toString
```
public static String toString(int[] vector)
```
    Integer array to string
    
    Parameters:
    
    vector - the integer array
    
    Returns:
    
    textual representation of the integer array
  - toString
```
public static String toString(long[] vector)
```
    Long array to string
    
    Parameters:
    
    vector - the long array
    
    Returns:
    
    textual representation of the long array
  - toString
```
public static String toString(BigInteger[] vector)
```
    BigInteger array to string
    
    Parameters:
    
    vector - the BigInteger array
    
    Returns:
    
    textual representation of the BigInteger array
  - toString
```
public static String toString(double[] vector)
```
    Double array to string
    
    Parameters:
    
    vector - the double array
    
    Returns:
    
    textual representation of the double array
  - toString
```
public static String toString(String[] vector)
```
    String array to string
    
    Parameters:
    
    vector - the String array
    
    Returns:
    
    textual representation of the String array
  - toString
```
public static String toString(boolean[] vector)
```
    Boolean array to string
    
    Parameters:
    
    vector - the Boolean array
    
    Returns:
    
    textual representation of the Boolean array
  - toString
```
public static String toString(int[][] matrix)
```
    Integer matrix to string
    
    Parameters:
    
    matrix - the matrix of integers
    
    Returns:
    
    textual representation of the matrix of integers
  - toString
```
public static String toString(double[][] matrix)
```
    Double matrix to string
    
    Parameters:
    
    matrix - the matrix of doubles
    
    Returns:
    
    textual representation of the matrix of doubles
  - toArray
```
public static int[] toArray(List<Integer> list)
```
    Converts a list of integers to an array
    
    Parameters:
    
    list - the list of integers
    
    Returns:
    
    the converted array of integers
  - toByteArray
```
public static byte[] toByteArray(int[] vector)
```
    Converts an integer array to a byte array
    
    Parameters:
    
    vector - the integer array
    
    Returns:
    
    the casted byte array

Class AvatarUtils

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

AvatarUtils

Method Detail

getFreeChildren

getFreeState

getIdentityChildren

getChildrenWithSingleNode

toString

toString

toOpenString

toString

toString

toString

toString

toString

toString

toString

toString

toArray

toByteArray